species:   Fugra
pid:       PID0974
parent:    FgmilR-7dps-41
paralog:   
locus:     NC_026475.1:4351452-4351572
matures:   ['CUGUCGAUAGCUUGGCCUGGCA', 'CCGGCGCCAUGCUCUCCGCCUUU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026475.1:4351452-4351572

4 out of bounds
6 alignments
6 proper strand
2 stranded perfect matches

 ***********************                                                                        ************************ 
UCCUGUCGAUAGCUUGGCCUGGCAAAAUUUAUGCCCUAGUUGCCCUUGAAUUAACUGAUGCGCCCCCUCUCCCAAUAGCCUCUACAGCUUCGAGCUGGCCGGCGCCAUGCUCUCCGCCUUU
....((.((.(((.(((((((((.........((..((((((.........))))))..)).......................(((((...)))))))))).)))).))).)).))....
--CUGUCGAUAGCUUGGCCUGGCA------------------------------------------------------------------------------------------------- l=22 a=0 c
--------------------------------------------------------------------------------------------------CCGGCGCCAUGCUCUCCGCCUUU l=23 a=0 c*
----------------------------------------------UGAAUUAACUGAUGCGCCCCCUCUCCC------------------------------------------------ l=27 a=1 ma
--------------------------------------------------------------------------------------------------CCGGCGCCAUGCUCUCCGCCUUU l=23 a=0 ma*

-------------------------------------------------AUUAACUGAUGCGCCCCCUCUCCCAAUAGCa----------------------------------------- l=31 a=1 
----------------------------------------------UGAAUUAACUGAUGCGCCCCCUCUCCC------------------------------------------------ l=27 a=1 (ma)
--CUGUCGAUAGCUUGGCCUGGC-------------------------------------------------------------------------------------------------- l=21 a=1 
--CUGUCGAUAGCUUGGCCUGGCAAAAUUUu------------------------------------------------------------------------------------------ l=29 a=3 

mb-00010
ax-1011001
ku-01
ss-100011101100
fn-011
